Metagenomic Bioinformatics Analysis
ID: 12905B25Q0022Type: Combined Synopsis/Solicitation
Overview

Buyer

AGRICULTURE, DEPARTMENT OFAGRICULTURAL RESEARCH SERVICEUSDA ARS PWA AAO ACQ/PER PROPALBANY, CA, 94710, USA

NAICS

Research and Development in Biotechnology (except Nanobiotechnology) (541714)

PSC

SPECIAL STUDIES/ANALYSIS- SCIENTIFIC DATA (B529)

Set Aside

Total Small Business Set-Aside (FAR 19.5) (SBA)

Original Source

https://sam.gov/opp/7f69eb502b9f409da575744e52fcca2e/view
Timeline
    Description

    The Department of Agriculture, specifically the Agricultural Research Service (ARS), is seeking qualified small businesses to conduct Metagenomic Bioinformatics Analysis on soil and water DNA samples in Riverside, California. The contractor will process a total of 1,275 samples, utilizing both Shotgun Metagenomics and Amplicon Metagenomics Sequencing, with specific tasks including DNA quality measurement, quality control, and sequencing, all to be completed within 160 days after receipt of the samples. This procurement is crucial for advancing metagenomic research, and interested parties must submit their quotes by December 27, 2024, at 5:00 PM PST to Maria Thomas at maria.thomas@usda.gov, adhering to the outlined evaluation criteria and wage determinations applicable to the contract.

    Point(s) of Contact
    Maria Thomas
    maria.thomas@usda.gov
    Spencer Hamilton
    spencer.hamilton@usda.gov
    Files
    Title
    Posted
    Attachment 1 Statement of Work.pdf
    The USDA Agricultural Research Service (ARS) has issued a Statement of Work (SOW) for conducting Metagenomic Bioinformatics Analysis on 1,275 soil and water DNA samples. The contractor is responsible for processing 475 samples through Shotgun Metagenomics and 800 samples using Amplicon Metagenomics Sequencing. Key tasks include measuring DNA quantity and quality, ensuring quality control, constructing specialized libraries, and performing sequencing with next-generation instruments. The deliverables include generating 50-100k reads per sample for amplicon sequencing and performing assembly-based analysis of shotgun metagenomics, with a completion deadline of 160 days after receipt of the samples. The results are to be formatted onto a hard disk and sent to the designated address in Riverside, CA. The primary contact for the project will be Dr. A. Mark Ibekwe at USDA ARS. This project illustrates the government's commitment to advancing metagenomic research and analysis through structured procurement processes.
    Attachment II Wage Determinations.pdf
    The document outlines wage determinations as mandated by the Service Contract Act, specifying required minimum wage rates for federal contracts. Wage Determination No. 2015-5629 applies to contracts within Riverside and San Bernardino counties in California, indicating that for contracts initiated after January 30, 2022, workers must be paid at least $17.20 per hour. For contracts awarded between January 1, 2015, and January 29, 2022, the minimum wage is set at $12.90 per hour unless a higher rate is listed. The document provides detailed wage rates for various occupations, emphasizing required fringe benefits, such as health and welfare allowances. Occupational listings include administrative, service, healthcare, and technical roles, detailing various pay scales. Notably, the document mentions compliance with additional Executive Orders regarding paid sick leave and vacation requirements. It stresses proper classification and payment procedures for any unlisted job titles through a conformance process, thereby ensuring fair worker compensation. This wage determination serves as a critical guideline for federal contractors, emphasizing worker protections and adherence to labor standards in government contracts.
    RFQ 12905B25Q022 Combined SynSOL Terms and Conditions.pdf
    The Request for Quotation (RFQ) 12905B25Q0022 is issued for Metagenomic Bioinformatics Analysis in Riverside, CA. The document outlines key contract terms, including the incorporation of Federal Acquisition Regulation (FAR) and Agriculture Acquisition Regulation (AGAR) clauses. The contract mandates compliance with various conditions related to payment procedures through the Invoice Processing Platform (IPP) and requires proper licenses for all federally mandated services. Bids must include a comprehensive technical proposal, demonstrating the offeror's capabilities, past performance on similar projects, and compliance with Service Contract Labor Standards. The evaluation criteria emphasize technical capability, prior experience, and pricing, with the intention to award to the lowest price technically acceptable (LPTA) offer. The RFQ also includes strict compliance measures related to telecommunications security, subcontracting policies, and prohibits using certain foreign products. This document exemplifies standard federal procurement practices, ensuring transparency, accountability, and the promotion of small business participation in government contracting.
    Lifecycle
    Title
    Type
    Metagenomic Bioinformatics Analysis
    Currently viewing
    Combined Synopsis/Solicitation
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