Transcriptomics (mRNA) Analysis 1345 Samples
ID: 68HE0B24Q0045Type: Combined Synopsis/Solicitation
Overview

Buyer

ENVIRONMENTAL PROTECTION AGENCYENVIRONMENTAL PROTECTION AGENCYORD SIMPLIFIED ACQ BRANCH (SAB)RESEARCH TRIANGLE PAR, NC, 27709, USA

PSC

SPECIAL STUDIES/ANALYSIS- ENVIRONMENTAL ASSESSMENTS (B510)

Set Aside

Total Small Business Set-Aside (FAR 19.5) (SBA)

Original Source

https://sam.gov/opp/2959b0ce176140e1bd4b35af811b54b8/view
Timeline
  1. 1
    Posted Dec 13, 2023 3:33 AM
  2. 2
    Updated Dec 13, 2023 3:33 AM
  3. 3
    Due Dec 18, 2023 4:00 PM
Description

Transcriptomics (mRNA) Analysis is being procured by the ENVIRONMENTAL PROTECTION AGENCY for the analysis of emerging contaminants in laboratory exposed frogs and fish tissues. This analysis is used to study the gene expression patterns and identify potential impacts of these contaminants on the organisms. The procurement notice is a Combined Synopsis/Solicitation with a Total Small Business Set-Aside. The Response is due on 12/18/2023 at 10:00pm CST. For more details, refer to the attachments provided.

Point(s) of Contact
Taylor, Cheri
(850) 934-9257
taylor.cheri@epa.gov
Files
No associated files provided.
Lifecycle
Title
Type
Transcriptomics (mRNA) Analysis 1345 Samples
Currently viewing
Combined Synopsis/Solicitation
Similar Opportunities
Sequencing Services for Shellfish Feeding and Ocea
Active
Commerce, Department Of
Sequencing Services for Shellfish Feeding and Ocean Acidification The Department of Commerce, National Oceanic and Atmospheric Administration, is seeking sequencing services for shellfish feeding and ocean acidification. These services are typically used for research and development in biotechnology, specifically in the field of shellfish feeding and ocean acidification. The procurement notice is a combined synopsis/solicitation for commercial items. It is a total Small Business Set-Aside, with the associated NAICS code being 541714. The small business size standard is 1,000 Employees. The procurement includes the purchase of the following commercial services: - CLIN 0001: Base Year Services for Illumina MiSeq Amplicon Sequencing - CLIN 0002: Base Year Services for Sanger Sequencing - CLIN 1001: Option Year 1 Services for RNA NovaSeq Platform Sequencing The period of performance for the base year is from 09/30/2024 through 09/29/2025. The place of performance is off-site at the vendor location. Interested offerors must submit their quotes electronically via email to JAMIE.ROSALES@NOAA.GOV no later than 12:00PM MST/MDT on 07/29/2024. Any questions regarding this solicitation should also be submitted via email to JAMIE.ROSALES@NOAA.GOV. For contract administration, the Department of Commerce will utilize the FedConnect® web portal. Offerors must be registered in FedConnect® and have access to the FedConnect® website. Please ensure timely submission of questions and quotes to avoid any delays in the procurement process.
Alligator Snapping Turtle eDNA Analysis from Filtered Water Samples
Active
Agriculture, Department Of
The US Department of Agriculture, Forest Service is seeking sources capable of performing environmental DNA (eDNA) analysis from filtered water samples to detect the presence of Alligator Snapping Turtles. The scope of work involves analyzing 135 water samples, collected from lakes and streams in Texas, using a specific method outlined by Spear et al. (2015) and Feist et al. (2018). The contractor must extract DNA from the samples and amplify it using a thermocycler profile. The process must ensure no cross-contamination and each sample must yield distinct results. Additionally, the contractor must employ a modified version of the testing methodology to validate the overall research study findings. Capability statements demonstrating the use of the specified testing methods and ensuring consistency with prior testing are crucial. The contract is expected to be a small business set-aside with an estimated value of $50,000 to $250,000. Laboratories capable of performing the specialized analysis are eligible to apply. The submission deadline is unspecified in the provided information. Interested parties should submit detailed capability statements via email to Laniece Nixon at laniece.nixon@usda.gov, with a courtesy copy to Keith Friot. Applications will be evaluated based on their ability to demonstrate a successful track record of performing the specific eDNA analysis using the required methods and equipment. For any clarification or further details, interested parties can contact Laniece Nixon or Keith Friot via email or phone. Nixon's email is laniece.nixon@usda.gov, and Friot's email and phone number are keith.d.friot@usda.gov and 9104751968, respectively.
A--Next Generation Sequencing (NGS) Services
Active
Environmental Protection Agency
A Sources Sought notice has been issued by the Environmental Protection Agency (EPA) for Next Generation Sequencing (NGS) Services. The EPA is conducting a market search for small businesses in preparation for a future procurement. The purpose of this notice is to gather information from the small business community regarding their interest and capability in performing the tasks outlined in the attached draft Performance Work Statement (PWS) related to NGS. The EPA will be using NGS to complete gene expression translational research for various research programs. The capability packages submitted by respondents should address specific areas such as accepting user-prepared sequencing libraries, short-read DNA and RNA sequencing, preparing DNA and RNA sequencing libraries compatible with Illumina instrumentation, performing sequencing on a specific number of samples per year, preparing 3’-tagged RNA-seq libraries, preparing libraries for full length RNA sequencing, performing QA/QC analysis, and supporting data transfer. Interested entities should submit a capability statement via FedConnect by August 16, 2024. The contract is anticipated to be an Indefinite Delivery Indefinite Quantity (ID/IQ) type contract with a single, 5-year ordering period. Small businesses are encouraged to submit capability statements, and the EPA reserves the right to set the resulting requirement aside for small businesses.
LICHEN RNA Analysis
Active
Dept Of Defense
The U.S. Army Engineer Research and Development Center (ERDC), Construction Engineering Research Laboratory (CERL), seeks external support for advanced RNA analysis of lichen samples. The primary goal is to extract, sequence, assemble, and functionally annotate genomic sequences for these samples. This competitive procurement arises following responses to a pre-solicitation notice. The Army seeks to contract specialized services not currently available within the government. The scope of work involves extracting RNA from lichen samples provided by CERL, performing sequencing analysis, and delivering annotated genomic sequences. Offerors should pay close attention to Section C of the attached solicitation document for a detailed description of the work scope and expectations. To be considered, applicants must possess expertise in RNA extraction, sequencing, and bioinformatics analysis. Experience with genomic analysis and a track record of successfully completing similar projects are essential. The ability to work collaboratively with CERL researchers is also highly desired. Funding for this project is estimated at $150,000 to $250,000, with the contract type being a Firm-Fixed-Price (FFP) agreement. Interested parties should carefully review the solicitation document and ensure their applications adhere to the requirements outlined in Section L. The deadline for submissions is provided in the solicitation document and will not be extended. Applications should be submitted solely via email to CERL-CT-Quotes@usace.army.mil. The evaluation of applications will prioritize the extent to which offerors meet the specific requirements detailed in the solicitation document. The Army reserves the right to conduct interviews with select applicants to gain further clarity on their proposals. For any clarifications or questions, applicants should contact the CERL Contract Team at CERL-CT-Quotes@usace.army.mil. Please note that responses to this opportunity must be received by the deadline mentioned in the solicitation document.
DFFRU Shallow Shotgun DNA Sequencing
Active
Agriculture, Department Of
The US Department of Agriculture's Agricultural Research Service seeks contractors for shallow shotgun DNA sequencing and analysis to support dietary research. The goal is to track species-level changes in gut microbiota, requiring next-generation sequencing technology. The scope of work involves processing and analyzing DNA samples, with a minimum of 3 million reads per sample, and delivering genotyping and raw data files. Contractors must provide a user-friendly platform for data access and analysis, employing alpha and beta diversity measures, and other statistical methods, within a 45-day turnaround time. The work must be completed in collaboration with USDA scientists. Offerors should possess expertise in DNA sequencing and analysis, be capable of delivering the required technology and services, and have a track record of successful project performance. Quotes should include a technical narrative, past performance references, and a fixed price valid for at least 60 days. The contract will be firm-fixed-price, with evaluations based on price, technical capability, and past performance. Vendors must submit their quotes by the deadline and ensure their certifications are up-to-date in the System for Award Management database. The desired period of performance is 60 days, and the estimated contract value is variable, depending on the options exercised. For clarification or questions, contact Roger Ammons at roger.ammons@usda.gov. Quotes are due by 9:00 AM ET on Monday, July 29, 2024.