Sequencing of premade, pooled DNA libraries using Illumina NovaSeq (PE150) sequencing for the USDA, ARS, PIRU in Logan, UT
ID: 12905B25Q0018Type: Combined Synopsis/Solicitation
Overview

Buyer

AGRICULTURE, DEPARTMENT OFAGRICULTURAL RESEARCH SERVICEUSDA ARS PWA AAO ACQ/PER PROPALBANY, CA, 94710, USA

NAICS

Research and Development in Biotechnology (except Nanobiotechnology) (541714)

PSC

SPECIAL STUDIES/ANALYSIS- SCIENTIFIC DATA (B529)

Set Aside

Total Small Business Set-Aside (FAR 19.5) (SBA)

Original Source

https://sam.gov/opp/d05256b63a594e89ac9383fbd9e21b5d/view
Timeline
    Description

    The Department of Agriculture, specifically the Agricultural Research Service (ARS), is seeking qualified small businesses to provide sequencing services for premade, pooled DNA libraries using the Illumina NovaSeq X Plus system at the Pollinating Insect Research Unit in Logan, Utah. The procurement involves sequencing 10 sample sets of animal, short-insert DNA libraries, which must be sequenced as a complete lane on a 10B flow cell, yielding approximately 375 GB of high-quality data. This initiative is crucial for advancing genomic research, emphasizing the importance of data quality and secure transfer in federal scientific projects. Interested contractors must submit their quotes by January 27, 2025, at 3 PM EST, and direct any inquiries to Shelley C. Steen at shelley.steen@usda.gov.

    Point(s) of Contact
    Shelley C Steen
    (510) 559-6350
    shelley.steen@usda.gov
    Files
    Title
    Posted
    RV1-statement of work - illumin sequencing PIRU.docx
    The USDA-ARS-PIRU requires sequencing for 10 sets of premade, pooled DNA libraries utilizing the Illumina NovaSeq X Plus system. Each library consists of animal, short-insert samples prepared with unique dual-indexing adapters and must be sequenced as a complete lane on a 10B flow cell, yielding approximately 375 GB of high-quality data. Prior to sequencing, each library will undergo a quality check, with results shared with researchers. Post-sequencing, data quality must also be verified, and the finalized sequence data should be provided in FASTQ format via secure methods, returning within a month of submission. Although data can be demultiplexed or combined, researchers are preferred to handle demultiplexing. Sample submissions will be sequential throughout the contract's term. This request reflects the USDA’s aim to advance genomic research through efficient sequencing services, underscoring the importance of data quality and secure transfer in federal scientific projects.
    Terms_Conditions_Provisions_Clauses-12905B2Q0018.docx
    The document is a Request for Quotation (RFQ) # 12905B25Q0018 from the USDA's Agricultural Research Service, targeting DNA sequencing of premade, pooled DNA libraries for the Pollinating Insect Research Unit in Logan, UT. The RFQ outlines various terms, conditions, and clauses relevant to the contract, such as options for term extension, payment procedures, and bidder qualifications, including compliance with federal regulations and labor standards. Key provisions include clauses related to the requirement for contractors to maintain a valid registration in the System for Award Management (SAM), adhere to the Inspection and Acceptance process, and fulfill obligations related to small business subcontracting. The RFQ specifies the need for electronic invoice submission via the Invoice Processing Platform, fostering efficient financial transactions. Evaluation criteria center on price and compliance with the solicitation's terms, with the objective of acquiring services at reasonable rates. Overall, this RFQ serves to engage qualified contractors to provide specialized DNA sequencing services while ensuring adherence to administrative and regulatory requirements necessary for federal contracting processes.
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